ccdef mapping example¶

[2]:

import ccdef

[3]:

map_df = ccdef.show_mapping(sample_file)

+----------+-------------------------+--------------+----------+------------+---------+-----------------------------+
| signal   | dataset                 | local_name   |   column | category   | loinc   | loinc_name                  |
|----------+-------------------------+--------------+----------+------------+---------+-----------------------------|
| HR       | /numerics/vitals        | HR           |        1 | numerics   | 8867-4  | Heart rate                  |
| HR       | /numerics/vitals        | PULSE        |        2 | numerics   | 8867-4  | Heart rate                  |
| NIBP-S   | /numerics/vitals        | NBP Sys      |        3 | numerics   | 76534-7 | BP sys by Noninvasive       |
| NIBP-D   | /numerics/vitals        | NBP Dias     |        4 | numerics   | 76535-4 | BP dias by Noninvasive      |
| NIBP-M   | /numerics/vitals        | NBP Mean     |        5 | numerics   | 76536-2 | BP mean by Noninvasive      |
| RR       | /numerics/vitals        | RESP         |        6 | numerics   | 76174-2 | Resp rate PulseOx.pleth     |
| SPO2     | /numerics/vitals        | SpO2         |        7 | numerics   | 76522-2 | Transmission % BldA PulseOx |
| ECG-II   | /waveforms/hemodynamics | II           |        1 | waveforms  | None    | ECG Lead II                 |
| ECG-III  | /waveforms/hemodynamics | III          |        2 | waveforms  | None    | ECG Lead III                |
| ECG-V    | /waveforms/hemodynamics | V            |        4 | waveforms  | None    | ECG Lead V                  |
| RR       | /waveforms/hemodynamics | RESP         |        5 | waveforms  | 76174-2 | Resp rate PulseOx.pleth     |
+----------+-------------------------+--------------+----------+------------+---------+-----------------------------+

[4]:

map_df

[4]:

	signal	dataset	local_name	column	category	loinc	loinc_name
0	HR	/numerics/vitals	HR	1	numerics	8867-4	Heart rate
1	HR	/numerics/vitals	PULSE	2	numerics	8867-4	Heart rate
2	NIBP-S	/numerics/vitals	NBP Sys	3	numerics	76534-7	BP sys by Noninvasive
3	NIBP-D	/numerics/vitals	NBP Dias	4	numerics	76535-4	BP dias by Noninvasive
4	NIBP-M	/numerics/vitals	NBP Mean	5	numerics	76536-2	BP mean by Noninvasive
5	RR	/numerics/vitals	RESP	6	numerics	76174-2	Resp rate PulseOx.pleth
6	SPO2	/numerics/vitals	SpO2	7	numerics	76522-2	Transmission % BldA PulseOx
7	ECG-II	/waveforms/hemodynamics	II	1	waveforms	None	ECG Lead II
8	ECG-III	/waveforms/hemodynamics	III	2	waveforms	None	ECG Lead III
9	ECG-V	/waveforms/hemodynamics	V	4	waveforms	None	ECG Lead V
10	RR	/waveforms/hemodynamics	RESP	5	waveforms	76174-2	Resp rate PulseOx.pleth

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